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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51289018_51305495_F

Intron Information:

Intron Rank:
144983
Intron Class:
major
Intron Phase:
Intron Coordinates:
51289018 - 51305495
Intron Length:
16478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGCTCATCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
45.5
-0.2
2.2
66.06
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035764
51288612 - 51306107
17496