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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51289018_51308278_F

Intron Information:

Intron Rank:
144985
Intron Class:
major
Intron Phase:
Intron Coordinates:
51289018 - 51308278
Intron Length:
19261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCTTCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
59.9
0.29
1.6
65.17
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041683
51288612 - 51308504
19893