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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51343406_51410772_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51343406 - 51410772
Intron Length:
67367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGCTT
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTC
Flanking Amino Acid:
SVLPRTQRAEVEITLQDIND
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.5
42.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.3
0.77
0.7
79.9
25.7
Minor 5ss
42.1
-0.9
3.5
64.4
47
Minor BPS
60.8
0.32
1.7
74.67
36.2

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707