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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51410905_51413682_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51410905 - 51413682
Intron Length:
2778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
AATAACTTGATT
Flanking Amino Acid:
MQLTAMDADEGANALVTYTI
Intron Amino Acid Position:
974

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
76.6
0.6
0.9
77.1
37.1
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
58
0.33
1.5
72.26
38.2

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707