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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51422048_51422789_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51422048 - 51422789
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTCCCCATATCT
Flanking Amino Acid:
LETLPKVILQVVARDDDQGL
Intron Amino Acid Position:
1486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.5
33.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73
0.52
0.9
66.9
39.2
Minor 5ss
30.6
-2.2
2.5
34.1
41.4
Minor BPS
49.7
0.06
2
70.26
46.2

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707