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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51440708_51444083_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51440708 - 51444083
Intron Length:
3376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
DADASTNAVISYRLTGGNSQ
Intron Amino Acid Position:
1604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
72.7
44.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.8
0.6
0.9
74.1
34.5
Minor 5ss
34.5
-1.8
3.3
50
46.3
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707