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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51444335_51447201_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51444335 - 51447201
Intron Length:
2867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGA
5'SS Class:
major
3'SS Sequence:
TTCTCCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATAAACT
Flanking Amino Acid:
VTHVPSPTTSGSFVFAVTVT
Intron Amino Acid Position:
1688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
65.9
42.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.2
0.77
0.8
81.7
28.6
Minor 5ss
48.8
-0.1
2.6
65.3
45.8
Minor BPS
54.4
0.22
2.1
79.78
41.5

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707