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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51451552_51460267_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
51451552 - 51460267
Intron Length:
8716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTGATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTCCTTGATC
Flanking Amino Acid:
FNCVCKTGYTGKTCDSAVNY
Intron Amino Acid Position:
3138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.4
0.55
0.9
68.2
36.2
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
80.6
0.95
1
82.61
30.8

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707