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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51460373_51461571_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51460373 - 51461571
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
VEGYYCHCPFGVFGNHCELN
Intron Amino Acid Position:
3173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
78.2
37.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
34.4
-1.8
2.8
43.3
43.8
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707