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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51466886_51467759_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51466886 - 51467759
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTACGTCTG
5'SS Class:
major
3'SS Sequence:
TGATTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTTCTCTGATT
Flanking Amino Acid:
QALAAQGILDQCPRLEGACT
Intron Amino Acid Position:
3364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.1
57.9
46.7
Major BPS
79
0.72
1
69
38.9
Major PPT
79.7
0.67
1
77.1
41.8
Minor 5ss
39
-1.2
3.2
55.2
43
Minor BPS
61.8
0.45
1.6
79.25
37.5

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707