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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51469223_51473692_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51469223 - 51473692
Intron Length:
4470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTGACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATCTTTTTAAAT
Flanking Amino Acid:
QESSNFTTVKIKSGKVHYVS
Intron Amino Acid Position:
3479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.8
0.51
1
66.8
43.9
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
68.2
0.65
1.3
78.79
37.6

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707