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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51473955_51478094_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51473955 - 51478094
Intron Length:
4140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAGAT
U12 Branch Point Sequence:
ATCTCCAGATCC
Flanking Amino Acid:
PSQPFKSTVAGFDGCISYIK
Intron Amino Acid Position:
3566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72.3
33
Major BPS
61.5
0.29
1.1
56.9
40.5
Major PPT
82.7
0.74
0.7
76.7
31.9
Minor 5ss
47.7
-0.2
2.8
65.1
46
Minor BPS
47.7
-0.1
2
62.87
42.2

Associated Gene:

Gene:
FAT4
Ensembl Gene ID:
ENSAPLG00000007730
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008042
51340259 - 51479965
139707