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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51505374_51507833_F

Intron Information:

Intron Rank:
124694
Intron Class:
major
Intron Phase:
Intron Coordinates:
51505374 - 51507833
Intron Length:
2460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017207
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017438
51504898 - 51515544
10647
ENSAPLT00000031314
51504898 - 51508519
3622