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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51505987_51507833_F

Intron Information:

Intron Rank:
124698
Intron Class:
major
Intron Phase:
Intron Coordinates:
51505987 - 51507833
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAAA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
72
32.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
38.2
-1.3
2.9
48.3
47.4
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017207
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039173
51505635 - 51507852
2218