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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51541682_51543403_F

Intron Information:

Intron Rank:
143542
Intron Class:
major
Intron Phase:
Intron Coordinates:
51541682 - 51543403
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTCTGTAAA
5'SS Class:
major
3'SS Sequence:
GTATTTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
68.6
37.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.2
0.66
0.9
70.5
44.2
Minor 5ss
36.7
-1.5
2.5
39.1
40.5
Minor BPS
54.4
0.12
1.8
66.71
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027348
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027443
51541373 - 51548061
6689
ENSAPLT00000032110
51541373 - 51558967
17595
ENSAPLT00000030338
51541373 - 51562795
21423
ENSAPLT00000028778
51541373 - 51554997
13625