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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51543470_51546971_F

Intron Information:

Intron Rank:
143543
Intron Class:
major
Intron Phase:
Intron Coordinates:
51543470 - 51546971
Intron Length:
3502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTCCATCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TGTTTGTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
75.7
0.58
0.9
66.9
38.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
49.1
0.01
2.2
74.71
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027348
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027443
51541373 - 51548061
6689