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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51543470_51554874_F

Intron Information:

Intron Rank:
143545
Intron Class:
major
Intron Phase:
Intron Coordinates:
51543470 - 51554874
Intron Length:
11405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GATTCTTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
74.6
0.55
0.8
74.4
29.7
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
53.4
0.19
2
74.25
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027348
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028778
51541373 - 51554997
13625