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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51543470_51558700_F

Intron Information:

Intron Rank:
143549
Intron Class:
major
Intron Phase:
Intron Coordinates:
51543470 - 51558700
Intron Length:
15231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
ACTCCCTCATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
44.8
-0.4
2
54.44
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027348
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032110
51541373 - 51558967
17595