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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51543470_51562515_F

Intron Information:

Intron Rank:
143547
Intron Class:
major
Intron Phase:
Intron Coordinates:
51543470 - 51562515
Intron Length:
19046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTCTCTATACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
82.1
0.72
0.9
76.5
37.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
48.9
-0.2
1.9
59.42
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027348
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030338
51541373 - 51562795
21423