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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5154456_5155340_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5154456 - 5155340
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGATTT
5'SS Class:
weak_major
3'SS Sequence:
ATTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCATTGATA
Flanking Amino Acid:
ISANAQCKRKTNEGGSQAES
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
77
32.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.7
0.69
0.9
77.4
41.2
Minor 5ss
55.9
0.2
2.7
73.7
36.6
Minor BPS
66.7
0.52
1.6
75.33
36.1

Associated Gene:

Gene:
ETNPPL
Ensembl Gene ID:
ENSAPLG00000008156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008497
5154324 - 5167315
12992