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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5155409_5156278_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5155409 - 5156278
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
VVEKIDVLLTEIEEATGMKT
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
ETNPPL
Ensembl Gene ID:
ENSAPLG00000008156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008497
5154324 - 5167315
12992