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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5156410_5156621_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5156410 - 5156621
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAACGTT
5'SS Class:
major
3'SS Sequence:
CCTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTAACACAACT
Flanking Amino Acid:
ATAEALHLIYKLKEQKILLS
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
72.3
37.6
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
80.3
0.68
0.7
75.2
27
Minor 5ss
43.3
-0.7
3.6
64.1
41.9
Minor BPS
51.1
0.11
2
79.84
41.2

Associated Gene:

Gene:
ETNPPL
Ensembl Gene ID:
ENSAPLG00000008156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008497
5154324 - 5167315
12992