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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51570784_51571106_R

Intron Information:

Intron Rank:
144754
Intron Class:
major
Intron Phase:
Intron Coordinates:
51570784 - 51571106
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTGTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.9
0.72
0.9
77.3
35.7
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
49.6
-0
2.4
69.02
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025241
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044787
51570560 - 51666829
96270