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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51571240_51573498_R

Intron Information:

Intron Rank:
144753
Intron Class:
major
Intron Phase:
Intron Coordinates:
51571240 - 51573498
Intron Length:
2259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
ACTACATCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
68.9
0.47
1
75
30
Major PPT
72.4
0.5
0.9
69.3
37
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
41.6
-0.5
2
58.2
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025241
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038602
51564517 - 51573617
9101