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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5159711_5161439_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5159711 - 5161439
Intron Length:
1729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TAGCTCTTACCT
Flanking Amino Acid:
IEETQKNGRKIAAFIAESMQ
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
77.4
30.8
Major BPS
69.2
0.48
1
61
37.1
Major PPT
87.8
0.85
0.7
84.9
29.9
Minor 5ss
37.9
-1.4
3.2
51.5
45.7
Minor BPS
60
0.39
1.6
74.13
42.6

Associated Gene:

Gene:
ETNPPL
Ensembl Gene ID:
ENSAPLG00000008156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008497
5154324 - 5167315
12992