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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51608718_51611443_F

Intron Information:

Intron Rank:
136158
Intron Class:
major
Intron Phase:
Intron Coordinates:
51608718 - 51611443
Intron Length:
2726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATGG
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
63.4
43.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82
0.72
0.8
74.3
35.8
Minor 5ss
42.9
-0.8
2.9
56.6
47.5
Minor BPS
45.6
-0.2
2.4
73.75
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023379
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036974
51604480 - 51611662
7183
ENSAPLT00000028137
51604480 - 51611662
7183