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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5161557_5163132_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5161557 - 5163132
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
KDSKKEFVHVAPSPDIYRGK
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.9
81
36.6
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
ETNPPL
Ensembl Gene ID:
ENSAPLG00000008156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008497
5154324 - 5167315
12992