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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5164964_5165640_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5164964 - 5165640
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TGATGTGGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CCTTCCTCACTG
Flanking Amino Acid:
KLSVCYFVNSGSEANDLALR
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
65.3
46
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
64.2
0.32
1.1
57.7
47.2
Minor 5ss
43.5
-0.7
2.8
50.1
46.1
Minor BPS
49
-0.2
1.9
54.83
46.9

Associated Gene:

Gene:
ETNPPL
Ensembl Gene ID:
ENSAPLG00000008156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008497
5154324 - 5167315
12992