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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5166075_5167247_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5166075 - 5167247
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGGCG
5'SS Class:
major
3'SS Sequence:
TACATTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATACAT
Flanking Amino Acid:
ETLALRRKHIGPSCKVFFAK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
55.6
40.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.9
0.65
0.8
77.2
36.6
Minor 5ss
27.7
-2.6
3.6
29.5
43.4
Minor BPS
47.9
-0
1.9
70.75
40.1

Associated Gene:

Gene:
ETNPPL
Ensembl Gene ID:
ENSAPLG00000008156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008497
5154324 - 5167315
12992