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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_517264_522842_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
517264 - 522842
Intron Length:
5579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCAATG
Flanking Amino Acid:
PREKKRGTEKLIAKAERIRL
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1.1
78.4
32.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
46
-0.4
2.6
61.1
43.8
Minor BPS
64.5
0.32
1.5
70.72
37.1

Associated Gene:

Gene:
LARP7
Ensembl Gene ID:
ENSAPLG00000012887
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013441
499617 - 522923
23307