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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51781664_51783262_R

Intron Information:

Intron Rank:
134558
Intron Class:
major
Intron Phase:
Intron Coordinates:
51781664 - 51783262
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTGTTGTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
74.7
41.5
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
45.4
-0.5
2.9
62.4
42.2
Minor BPS
46
-0.3
2.3
65.78
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019704
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021904
51780936 - 51783304
2369