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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51820329_51831656_R

Intron Information:

Intron Rank:
149728
Intron Class:
major
Intron Phase:
Intron Coordinates:
51820329 - 51831656
Intron Length:
11328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.5
0.84
0.9
90.6
22.1
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
64.4
0.31
1.5
70.73
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028093
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040446
51820151 - 51836945
16795