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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51831734_51832123_R

Intron Information:

Intron Rank:
149726
Intron Class:
major
Intron Phase:
Intron Coordinates:
51831734 - 51832123
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TCTTTCCCATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
66.7
0.41
1
57.8
39
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
42.2
-0.5
2.2
64.08
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028093
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035923
51831533 - 51833391
1859
ENSAPLT00000044913
51807723 - 51836945
29223
ENSAPLT00000040446
51820151 - 51836945
16795