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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51841780_51843309_R

Intron Information:

Intron Rank:
135793
Intron Class:
major
Intron Phase:
Intron Coordinates:
51841780 - 51843309
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
TTGCTAAATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTGCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
67
40
Major BPS
76.8
0.67
1
66
40.9
Major PPT
70.9
0.47
1
67.9
41.7
Minor 5ss
35.7
-1.6
3
44.2
43.7
Minor BPS
64.8
0.54
2.1
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020455
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032426
51841736 - 51851853
10118