Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_51901115_51905882_R

Intron Information:

Intron Rank:

141226

Intron Class:

major

Intron Phase:

Intron Coordinates:

51901115 - 51905882

Intron Length:

4768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TGATTCTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.9

Major BPS

0.92

0.9

86.2

29.1

Major PPT

88.1

0.86

0.8

80.3

37.3

Minor 5ss

34.7

-1.7

3.2

41.8

38.8

Minor BPS

78.4

0.97

1.1

85.31

34.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023320

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021666

51901088 - 51907589

6502