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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5202120_5202387_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5202120 - 5202387
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
ATATGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTTACAAAT
Flanking Amino Acid:
PGVPGVDGEQGPKGSKGDMG
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.9
0.47
1
67.7
42.8
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
48.1
-0
1.9
71.04
39.5

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064