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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5202433_5204132_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5202433 - 5204132
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
TTGCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATATTTCAATT
Flanking Amino Acid:
PGPQGLQGPKGEPGSPGVPG
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.2
0.79
0.8
80.4
31.6
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
53.2
0.18
1.5
68.14
36.8

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064