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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5204178_5205608_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5204178 - 5205608
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTCCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAAGT
Flanking Amino Acid:
LQRIATLTVTGPPGPPGPQG
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.5
42.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
37.4
-1.4
3
52.7
43.6
Minor BPS
55
0.24
1.9
77
39.7

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064