Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5205633_5208117_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5205633 - 5208117

Intron Length:

2485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTACCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTCTTGTTAATA

Flanking Amino Acid:

YNGNIHEALQRIATLTVTGP

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

26.2

Major BPS

84.4

0.85

34.5

Major PPT

73.4

0.53

0.9

68.1

37.2

Minor 5ss

41.1

-1

2.5

50.4

46.1

Minor BPS

54.5

0.14

2.1

65.77

41.9

Associated Gene:

Gene:

COL25A1

Ensembl Gene ID:

ENSAPLG00000008681

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009056

5201163 - 5301226

100064