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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5208774_5210760_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5208774 - 5210760
Intron Length:
1987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAAAT
Flanking Amino Acid:
PGSRGPKGSKGDTGDRGDTG
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.8
38.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.4
0.48
0.8
67.9
31.2
Minor 5ss
32.9
-2
2.7
43.5
43.5
Minor BPS
57.6
0.32
1.7
72.92
43.9

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064