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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5211777_5212566_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5211777 - 5212566
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTCATTATTT
Flanking Amino Acid:
PGLPGLPGTKGDRGEAGPPG
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81
0.7
0.8
75.9
32.8
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
55.5
0.25
1.9
73.8
43.2

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064