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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5226753_5226917_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5226753 - 5226917
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGCCTTTCATC
Flanking Amino Acid:
DPGSSAAGIKGEPGESGRPG
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
51.4
0.03
1.7
61.62
38.4

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064