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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_5226951_5231889_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5226951 - 5231889
Intron Length:
4939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
GATTTTCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTCTTGTGGATT
Flanking Amino Acid:
NGPKGDTGEKGDPGSSAAGI
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
74.7
0.56
1
73.8
41.4
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
47.4
-0.1
2.2
70.57
41.2

Associated Gene:

Gene:
COL25A1
Ensembl Gene ID:
ENSAPLG00000008681
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009056
5201163 - 5301226
100064