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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52271982_52278245_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52271982 - 52278245
Intron Length:
6264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TATCACTGATCA
Flanking Amino Acid:
SCASSLSASSDDLEPEWLDG
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
55.9
40.6
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
84
0.77
0.7
76.5
32
Minor 5ss
30.8
-2.2
3.5
35.4
42
Minor BPS
48.6
-0.1
1.9
64.73
40.6

Associated Gene:

Gene:
INTU
Ensembl Gene ID:
ENSAPLG00000008968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009332
52271824 - 52315252
43429