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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52287718_52293118_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52287718 - 52293118
Intron Length:
5401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
ATTATCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTATCTTCATA
Flanking Amino Acid:
VLSCIPGPMQVKLTFETSIF
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.1
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
0.8
69.5
36.1
Minor 5ss
34.4
-1.8
3.5
46
49.3
Minor BPS
56.9
0.21
1.7
69.83
36.7

Associated Gene:

Gene:
INTU
Ensembl Gene ID:
ENSAPLG00000008968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009332
52271824 - 52315252
43429