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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52298058_52298867_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52298058 - 52298867
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATACTGTTAATG
Flanking Amino Acid:
LESVTGTQIISSSLFLCEKL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.6
30.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.7
0.69
0.9
73.8
41.4
Minor 5ss
33.4
-1.9
3.6
46.9
48.4
Minor BPS
48.4
-0.2
2.1
55.58
40

Associated Gene:

Gene:
INTU
Ensembl Gene ID:
ENSAPLG00000008968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009332
52271824 - 52315252
43429