About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52298958_52299551_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52298958 - 52299551
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATGTTTGAATT
Flanking Amino Acid:
KLLVIGLPEENVPLSQLRIM
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
57.4
0.31
1.5
73.08
38.4

Associated Gene:

Gene:
INTU
Ensembl Gene ID:
ENSAPLG00000008968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009332
52271824 - 52315252
43429