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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52299630_52300730_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52299630 - 52300730
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GATATTCTAACT
Flanking Amino Acid:
TLKFMYSSLDSAFCQVENVS
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.2
0.57
1
72.9
41.9
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
53.6
0.19
1.7
71.24
39.2

Associated Gene:

Gene:
INTU
Ensembl Gene ID:
ENSAPLG00000008968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009332
52271824 - 52315252
43429