About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52300921_52304327_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52300921 - 52304327
Intron Length:
3407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
TTAAATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATGTTTAAAT
Flanking Amino Acid:
RWLTLPQEIKMEIDTALSDL
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.8
0.56
1
70.9
43.6
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
54.1
0.21
1.8
69.84
40.7

Associated Gene:

Gene:
INTU
Ensembl Gene ID:
ENSAPLG00000008968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009332
52271824 - 52315252
43429