About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_52304382_52305751_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52304382 - 52305751
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACATT
5'SS Class:
major
3'SS Sequence:
CCTTTGTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AAATTCTGAACT
Flanking Amino Acid:
DLEAADFAELSEDYYDMRRL
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.9
38.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.5
0.69
0.8
74.8
33.5
Minor 5ss
44.8
-0.6
3.1
63
42.8
Minor BPS
67.1
0.61
1.4
77.61
37.9

Associated Gene:

Gene:
INTU
Ensembl Gene ID:
ENSAPLG00000008968
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009332
52271824 - 52315252
43429